Persona: Trinity Soul

Shin, Takuro and Megumi reflect on Morimoto's death and the crisis that took place in Ayanagi City. Inui gets injured when Ayane revives her clone and uses its persona to disable Nakamura and his staff members as it head towards the city. While Akihiko tries to stop the clone, Ryo confronts him and warns him to back off.

Shin, Kanaru, Takuro and Megumi were rescued from the Marebito hideout when a raid had been launched. Kanaru reveals to Megumi that she was a cyborg planted by the Marebito and made by Keisuke in order to locate students who had the potential in summoning Personas. Shin spends the late afternoon with Kanaru. But when snow begins to fall on Ayanagi City, Shin receives a phone call and finds out about Kanaru. Shin later finds out that Kanaru had collapsed and cradled her in his arms.

Narasaki gets affected by the Apathy Syndrome, forcing everyone including Akihiko to start making preparations to locate the Marebito hideout with Jun's abduction under their watch. Keisuke gets resurrected after Jun got unconscious to control their Persona. Most of the surviving Marebito's Persona were starting to get berserk due to the lack of suppression medication required. Meanwhile, Shin encounters Hiiragi, who was involved in Keisuke's research on Personas and reveals to him the true reason for the nature of their work and why his parents left them in the first place.

While taking a break from watching Megumi do a hip hop dance rountine, Takuro spotted someone who appears to be his father from the beach. Inui tells Shin and the others that the people who reemerge from their disappearance due to the Apathy Crisis had returned with either different souls or bodies. During this time, Takuro and his father try to reconcile their differences after the latter had disappeared, forcing a burden on his son and the rest of his family.

While Jun recuperates from his shoulder wound, Megumi's memories of her abhorrence towards personas were revealed. Her brother Tomoya died when her persona was activated, leading to hatred from her mother. Megumi and her mom had a hard time mending their family ties until an accident with a trailer truck had Megumi activate her persona to save her mother from drowning, resulting in their reconnection of their family bonds and ending her mom's hatred over Megumi.

Shin, still depressed over the disappearance of Ryō and Eiko, goes back to the old Kanzato residence to see Akihiko Sanada in the house. He, with Inui, informs Shin and the others Nagamori Gakuen students/Persona users on the truth behind the string of incidents dubbed by both police and the media as the "Reverse" Incidents with the reason on why the incidents were still taking place in Ayanagi City as of now.

Mariya kills off the rogue Yuji in the midst of a parent-teacher conference in Nagimori Gakuen. Ito and Eiko team up to find out what Ryō is up to by planting a GPS device in his vehicle. Ryō later faces off against Mariya in the mountains outside of Ayanagi City. Despite being wounded by Mariya's persona, Ryō was able to severely defeat his Pesona. Before Eiko could aid Ryō, his Persona sensed Eiko in the area and fired a beam shot on her chest, killing her. In the Kanzato residence, Jun had been able to sense Ryō and Eiko's plight.

Shin, Takurō, and Megumi bust up a shadow extraction group only to find out that Kanaru is the leader of the group. After a talk, it becomes obvious that she's addicted to shadow extractions and they try convincing her to quit. They then do a sleep over to try to keep her from going out. Toru reveals some information that he knew several other persona users. After she agrees to another shadow extraction, Shin breaks it up by scaring the other boys of with his persona. Depressed because Kanaru gave up, Mayuri offers to do it to her. Kanaru refuses and goes and hides in the park. Shin runs into Mayuri and she leads him to her. He goes into the place she's hiding in and then after he says he will wait outside for her till she calms down. Kanaru freaks out and Shin rushes in to help her. Shin holds onto Kanaru and as the others arrive, they are lifted into the sky by a large bubble of purple persona like energy.

Shin goes along with Eiko to examine the submarine whose entire crew just disappeared. Eiko soon reveals the decision Ryou had to make in order to save Jun. How will this affect how Shin sees his brother?

Shin, Jun, Megumi, Kanaru and Takurō alongside Yumi go to an inn in the outskirts of Ayanagi City for a break. During this time, Takurō tries to train himself to use his Persona. Megumi had reawakened her Persona after seeing Yumi grab a white feather from the top of the lighthouse, who almost died if Megumi's Persona didn't help her in saving Yumi. Meanwhile, Shin meets up with the mysterious woman after his Persona had attacked her in the beach.

Shin hears Takuro, Megumi, and Kanaru talking about a student who dissappeared. Upon hearing the students name, Shin realizes he is one of people on Ryo's list. Later that night, Shin hears Jun leave and goes after him. Upon catching up he learns that Jun is hearing a voice in pain. Deciding to go with his brother to find it, Shin and Jun end up at an old abandon building.

Hearing a loud noise from their karaoke room, Shin and Takuro go to investigate and find Kanaru covered in blood shielding Megumi. After looking around the room, the two notice one of the bodies is turned inside out. Later at the police station, Ryo questions Shin about why he was there.

Ryō Kanzato, an officer in the Ayanagi Police with the rank of Superintendent, had been dispatched to a Japanese Coast Guard PLH ship after Japanese Coast Guard crewmembers discovered that their Deep Submergence Vehicle had its entire crew missing, baffling some of them. Meanwhile, mysterious deaths had been reported throughout the city once more. Ryō had rescued Yumi Tasaka, who had been under police custody, from being killed by an unknown assailant with his Persona. Ryō's siblings, Shin and Jun, arrive back in Ayanagi City in the course of his investigation and battle against the assailant with his own Persona. After Shin's arrival, his Persona had awakened and killed the same assailant's Persona after it had threatened him earlier during a walk around the city.